From Enhanced Sampling to Reaction Profiles

نویسندگان

چکیده

The determination of efficient collective variables is crucial to the success many enhanced sampling methods. As inspired by previous discrimination approaches, we first collect a set data from different metastable basins. are then projected with help neural network into low-dimensional manifold in which basins well-discriminated. This here guaranteed imposing that follows preassigned distribution. thus obtained lead an and often allow reducing number multibasin scenario. We check validity method two-state systems. move multistep chemical processes. In latter case, at variance one single variable suffices, leading not only computational efficiency but also very clear representation reaction free-energy profile.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Enhanced sampling algorithms.

In biomolecular systems (especially all-atom models) with many degrees of freedom such as proteins and nucleic acids, there exist an astronomically large number of local-minimum-energy states. Conventional simulations in the canonical ensemble are of little use, because they tend to get trapped in states of these energy local minima. Enhanced conformational sampling techniques are thus in great...

متن کامل

From Sound Sampling To Song Sampling

This paper proposes to use the techniques of Music Information Retrieval in the context of Music Interaction. We describe a system, the SongSampler, inspired by the technology of audio sampling, which automatically samples a song to produce an instrument (typically using a MIDI keyboard) that plays sounds found in the original audio file. Playing with such an instrument creates an original situ...

متن کامل

Energy Profiles and Reaction Surfaces

by determining spectrometrically the extent of ionization for p-anisyldiphenylmethanol and correlated it with the known pKR+ value (-1.24)37 of p-anisyldiphenylmethyl cation. The ~ K R + values for the monocations and also the values corresponding to the second neutralization of the dications were determined at 25 "C in 50% acetonitrile by means of the UV spectrophotometric method described in ...

متن کامل

Enhanced sampling of rare events

We present a method to enhance sampling of a given reaction coordinate by projecting part of the random thermal noise along a preferential direction. The approach is promising to study rough energy landscapes and highly activated barriers that can be overcome by increasing the attempt frequency. Furthermore it allows us to rescale a given reaction coordinate without biasing the configurational ...

متن کامل

Enhanced, targeted sampling of high-dimensional free-energy landscapes using variationally enhanced sampling, with an application to chignolin.

The capabilities of molecular simulations have been greatly extended by a number of widely used enhanced sampling methods that facilitate escaping from metastable states and crossing large barriers. Despite these developments there are still many problems which remain out of reach for these methods which has led to a vigorous effort in this area. One of the most important problems that remains ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Journal of Physical Chemistry Letters

سال: 2021

ISSN: ['1948-7185']

DOI: https://doi.org/10.1021/acs.jpclett.1c02317